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Stable Isotope Fractionation Caused by Glycyl Radical Enzymes during Bacterial Degradation of Aromatic Compounds

机译:芳香化合物细菌降解过程中糖基自由基酶引起的稳定同位素分馏

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摘要

Stable isotope fractionation was studied during the degradation of m-xylene, o-xylene, m-cresol, and p-cresol with two pure cultures of sulfate-reducing bacteria. Degradation of all four compounds is initiated by a fumarate addition reaction by a glycyl radical enzyme, analogous to the well-studied benzylsuccinate synthase reaction in toluene degradation. The extent of stable carbon isotope fractionation caused by these radical-type reactions was between enrichment factors (ɛ) of −1.5 and −3.9‰, which is in the same order of magnitude as data provided before for anaerobic toluene degradation. Based on our results, an analysis of isotope fractionation should be applicable for the evaluation of in situ bioremediation of all contaminants degraded by glycyl radical enzyme mechanisms that are smaller than 14 carbon atoms. In order to compare carbon isotope fractionations upon the degradation of various substrates whose numbers of carbon atoms differ, intrinsic ɛ (ɛintrinsic) were calculated. A comparison of ɛintrinsic at the single carbon atoms of the molecule where the benzylsuccinate synthase reaction took place with compound-specific ɛ elucidated that both varied on average to the same extent. Despite variations during the degradation of different substrates, the range of ɛ found for glycyl radical reactions was reasonably narrow to propose that rough estimates of biodegradation in situ might be given by using an average ɛ if no fractionation factor is available for single compounds.
机译:用两种硫酸盐还原菌培养物研究了间二甲苯,邻二甲苯,间甲酚和对甲酚降解过程中的稳定同位素分馏。所有四种化合物的降解都是通过甘氨酰自由基酶的富马酸酯加成反应引发的,类似于在甲苯降解中经过充分研究的苄基琥珀酸合酶反应。由这些自由基型反应引起的稳定碳同位素分馏程度介于-1.5和-3.9‰的富集因子(ɛ)之间,与先前提供的厌氧甲苯降解数据的数量级相同。根据我们的结果,对同位素分馏的分析应适用于原位生物修复所有通过小于14个碳原子的糖基自由基酶机理降解的污染物的评估。为了比较碳原子数不同的各种底物降解时的碳同位素分馏,计算了本征ɛ(ɛ本征)。比较了在琥珀酸苄酯合酶反应发生的分子的单个碳原子上的内源性与化合物特异性的内源性,比较了两者的平均变化幅度相同。尽管在不同底物的降解过程中存在差异,但对于糖基自由基反应,发现的range范围相当狭窄,因此建议如果没有分馏因子可用于单个化合物,则可以通过使用平均值given粗略估算原位生物降解。

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